Match details
Record ID: |
CP132235.1 |
Database: |
nt |
Go to original record |
Description: |
Oryza sativa Japonica Group cultivar Nipponbare isolate AGIS-1.0 chromosome 1. |
Taxon: |
Oryza sativa Japonica Group |
Original size: |
43929697 bp |
View other 2 matches for this record
Method: |
QL-TAX-OS-006 |
Go to GMOMETHODS record |
Description: | Qualitative PCR method for detection of rice sucrose-phosphate synthase gene (Jiang et al., 2009). |
Target: | rice sucrose-phosphate synthase |
View other 10 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
2 |
40741866 |
40742144 |
- |
279 bp |
|
1 ttgcgccctg acggatatct ttcagtttgt aaccaccgga tgacgcacgg
51 acggctcgga tcatcccgaa aagatcaacc gcggcgcgag cacgagacca
101 ccgtgggccc catggcccac cgacttacac aatctctccc actgccatgc
151 gggcccacac ccgcaacagt ccagtccaga gagccccgaa ctcctccaaa
201 cccggggggg ccacaccctg ccacgtgtca cccgccgcgc ctccctctca
251 tcctctctct cctcgtccag tgcttctcc
View other 3 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerB |
100.0 |
19 bp |
0 |
0 |
279 |
261 |
4.48e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.