Match details
| Record ID: |
OP055810.1 |
| Database: |
nt |
Go to original record |
| Description: |
Rosa hybrid cultivar MAX2A (MAX2A) mRNA, partial cds. |
| Taxon: |
Rosa hybrid cultivar |
| Original size: |
1029 bp |
View other 6 matches for this record
| Method: |
QL-ELE-00-012 |
Go to GMOMETHODS record |
|
View in JRC GMO-Matrix
|
|
| Description: | Qualitative duplex PCR method for detection of Cauliflower Mosaic Virus 35S promoter and nopaline synthase terminator (partim CaMV P-35S) (Waiblinger et al., 2008). |
| Target: | CaMV P-35S |
View other 15625 matches for this method
| Predicted amplification details: |
| Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
| 0 |
0 |
165 |
247 |
+ |
83 bp |
|
1 gcctctgccg acagtggtcc caaagatgga cccccacccc acgaggagca
51 tcgtggaaaa agaagacgtt ccaaccacgt ctt
View other 9 matches with an identical amplicon
| Primers and probe alignment: |
| Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
| primerA |
100.0 |
18 bp |
0 |
0 |
1 |
18 |
4.60e-08 |
| primerB |
100.0 |
22 bp |
0 |
0 |
83 |
62 |
3.59e-10 |
| probe |
95.7 |
23 bp |
0 |
1 |
21 |
43 |
1.67e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.
