Match details
Record ID: |
KT716391.1 |
Database: |
nt |
Go to original record |
Description: |
Enterococcus faecalis strain 3EF plasmid pJ3EF transposon Tn6010-like insertion sequence IS26, complete sequence, hypothetical protein, OqxA membrane-fusion protein (oqxA), OqxB integral membrane protein (oqxB), and transcriptional regulator genes, complete cds, and insertion sequence IS26, complete sequence; and transposon Tn5 bleomycin resistance protein (ble) gene, partial cds, and aminoglycoside-3'-O-phosphotransferase-IIa (aph(3')-IIa) gene, complete cds. |
Taxon: |
Enterococcus faecalis |
Original size: |
8370 bp |
View other 1 match for this record
View other 58813 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
7543 |
7715 |
- |
173 bp |
|
1 ggatctcctg tcatctcacc ttgctcctgc cgagaaagta tccatcatgg
51 ctgatgcaat gcggcggctg catacgcttg atccggctac ctgcccattc
101 gaccaccaag cgaaacatcg catcgagcga gcacgtactc ggatggaagc
151 cggtcttgtc gatcaggatg atc
View other 57974 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
16 bp |
0 |
0 |
1 |
16 |
1.08e-06 |
primerB |
100.0 |
16 bp |
0 |
0 |
173 |
158 |
1.08e-06 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.