Match details
| Record ID: |
KT225497.1 |
| Database: |
nt |
Go to original record |
| Description: |
Oryza sativa Japonica Group cultivar Dong Jin sucrose phosphate synthase 3 gene, partial cds. |
| Taxon: |
Oryza sativa Japonica Group |
| Original size: |
1092 bp |
View other 1 match for this record
| Method: |
QL-TAX-OS-006 |
Go to GMOMETHODS record |
| Description: | Qualitative PCR method for detection of rice sucrose-phosphate synthase gene (Jiang et al., 2009). |
| Target: | rice sucrose-phosphate synthase |
View other 10 matches for this method
| Predicted amplification details: |
| Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
| 0 |
0 |
63 |
339 |
+ |
277 bp |
|
1 ttgcgcctga acggatatct ttcagtttgt aaccccggat gacgcacgga
51 cggctcggat catcccgaaa agatcaaccg cggcgcgagc acgagaccac
101 cgtgggcccc atggcccacc gacttacaca atctctccca ctgccatgcg
151 ggcccacacc cgcaacagtc cagtccagag agccccgaac tcctccaaac
201 ccgggggggc cacaccctgc cacgtgtcac ccgccggcct ccctctcatc
251 ctctctctcc tcgtccagtg cttctcc
| Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
| primerA |
100.0 |
18 bp |
0 |
0 |
1 |
18 |
1.47e-07 |
| primerB |
100.0 |
19 bp |
0 |
0 |
277 |
259 |
4.44e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.
