Match details
| Record ID: |
CP012609.1 |
| Database: |
nt |
Go to original record |
| Description: |
Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
| Taxon: |
Oryza sativa Indica Group |
| Original size: |
44526634 bp |
View other 1 match for this record
| Method: |
QL-TAX-OS-006 |
Go to GMOMETHODS record |
| Description: | Qualitative PCR method for detection of rice sucrose-phosphate synthase gene (Jiang et al., 2009). |
| Target: | rice sucrose-phosphate synthase |
View other 10 matches for this method
| Predicted amplification details: |
| Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
| 0 |
2 |
41278104 |
41278382 |
- |
279 bp |
|
1 ttgcgccctg acggatatct ttcagtttgt aaccaccgga tgacgcacgg
51 acggctcgga tcatcccgaa aagatcaacc gcggcgcgag cacgagacca
101 ccgtgggccc catggcccac cgacttacac aatctctccc actgccatgc
151 gggcccacac cagcaacagt ccagtccaga gagccccgaa ctcctccaaa
201 cccggggggg ccacaccctg ccacgtgtca cccgccgcgc ctccctctca
251 tcctctctct cctcgtccag tgcttctcc
View other 4 matches with an identical amplicon
| Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
| primerB |
100.0 |
19 bp |
0 |
0 |
279 |
261 |
4.48e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.
