Match details
Record ID: |
KP699012.1 |
Database: |
nt |
Go to original record |
Description: |
Vicia amurensis isolate L-F_HLJ4 tRNA-Leu (trnL), trnL-F intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Vicia amurensis |
Original size: |
679 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
521 |
+ |
521 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acttaccaag tgaaaacttt caaattcaga gaaaccctgg aattaaaaat
101 gggcaatcct gagccaaatc cttctttccg aaaacaaaaa aagaaaagtt
151 cagaaagttc aaatcaaaaa aggataggtg cagagactca atggaagctg
201 ttctaacaaa tggagttgac aacattcaat tgattaatga agatttcgaa
251 cttctatttg taaattgtca atattttgtt ttgattctat cacaattgaa
301 acattagaat caattacaac tggaagaaaa aatgttgaat attcattgat
351 ccaatcagtc actccactat aatctgatgg atcttttaaa tcactgatta
401 atcagacgag aataaagata gagtcccatt ctacatgtca ataccgacat
451 caatgaaatt ttgagtaaga ggaaaatccg tcgactttag aaatcgtgag
501 ggttcaagtc cctctatccc c
View other 4 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.34e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
521 |
502 |
2.34e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.