Match details

Record ID: MZ374065.1
Database: nt Go to original record
Description: Expression vector pBHg-FfNoxA-OE sequence.
Taxon: Expression vector pBHg-FfNoxA-OE
Original size: 11584 bp

View other 1 match for this record


Method: QL-ELE-00-023 Go to GMOMETHODS record
View in JRC GMO-Matrix
Description:Qualitative PCR method for detection of T35S pCAMBIA sequences (Rischitor et al., 2016).
Target:T35S pCAMBIA

View other 1686 matches for this method


Predicted amplification details:
Mismatches Gaps From To Strand Amplicon size
1 1 10507 10643 - 137 bp

Amplicon: 137 bp
1     acgggggtct ggattttagt actggatttt ggttttagga attagaaatt
51    ttattgatag aagtatttta caaatacaaa tacatactaa gggtttctta
101   tatgctcaac acatgagcga aaccctatag gaaccct 

View other 7 matches with an identical amplicon


Primers alignment:
Primer/Probe % Identity Length Mismatches Gaps From To Score
primerA 95.2 21 bp 0 1 2 21 3.45e-07
primerB 100.0 23 bp 0 0 137 115 1.68e-10


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.