Match details
Record ID: |
OM397417.1 |
Database: |
nt |
Go to original record |
Description: |
Synthetic construct 5-enolpyruvylshikimate 3-phosphate (epsps) gene, complete cds. |
Taxon: |
synthetic construct |
Original size: |
2075 bp |
View other 13 matches for this record
View other 26 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
377 |
497 |
+ |
121 bp |
|
1 cctttaggat ttcagcatca gtggctacag cctgcatgct tcacggtgca
51 agcagccggc ccgcaaccgc ccgcaaatcc tctggccttt ccggaaccgt
101 ccgcattccc ggcgacaagt c
View other 22 matches with an identical amplicon
Primers and probe alignment: |
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
24 bp |
0 |
0 |
1 |
24 |
4.34e-11 |
primerB |
100.0 |
18 bp |
0 |
0 |
121 |
104 |
6.84e-08 |
probe |
100.0 |
19 bp |
0 |
0 |
62 |
80 |
2.05e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.