Match details
Record ID: |
ON212145.1 |
Database: |
nt |
Go to original record |
Description: |
Lonicera caerulea voucher RU2_9 GMC tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Lonicera caerulea |
Original size: |
1015 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
586 |
+ |
586 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 actactaagt gagaactttc aaattcagag aaaccccgga attaataaaa
101 atgggcaatc ctgagccaaa tccagttttc cgaaaacaag ggtttagaaa
151 gcaaaaatca aaaaggatag gtgcagagac tcaatggaag ctgttctaac
201 aaacggagtt gactgtcgtg tgttggtaga aagaatcctt ccatagaaac
251 ttcagaaagg ataaacctat aaacatagat atacgtattg aaatgctatg
301 atactatatc aaatgattaa tgacgatcct aatttgtatc tgtattttat
351 atatatcaaa atggaagaat tgttgtgaag tgattccata ttgaagaaag
401 aatcaaatat tcattgatca aatcattcac tccatagtct gatcgatctt
451 ttgaagaact gattaatcgg acgagaataa agatagagtc ccattctaca
501 tgtcaagacc ggcaacaatg aaatttatag taagaggaaa atccgtcgac
551 tttagaaaty gtgagggttc aagtccctct atcccc
View other 61 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.64e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
586 |
567 |
2.64e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.