Match details
Record ID: |
KJ729787.1 |
Database: |
nt |
Go to original record |
Description: |
Reaumuria reflexa clone 1 tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Reaumuria reflexa |
Original size: |
1018 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
11 |
585 |
+ |
575 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggcatgctg
51 actagtaggg aacctactaa gtgataactt tcaaattcag aaaaaccctg
101 gaattaataa aaatgggcaa tcctgagcca actcctgttt tcaaaacagt
151 aaaaaaaaaa ttcttaaagt gagaagaaat gatggatagg tgcagagact
201 caacggaagc tgttctaaca aatggagttg actgcgttgt tataagaatt
251 cttccatcaa aacttcaaaa aagatcaaga caaacattta gaatttagat
301 ttagataaat acgtactgaa atactctaaa aaagaaaaaa acgtcttaat
351 gggcggacaa aatctgtctt tttatatgaa aaagtggaag aatattcatt
401 tataaaagta ttcgctccat ggtccgatag atcttttttt tgacgaactg
451 ctcaatcgga cgagaatgaa gatagagtcc cattctacat gtcaatactg
501 acaacaatga aatttatagt atgaggaaaa tccgtcgact ttagaaatcg
551 tgagggttca agtccctcta tcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.59e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
575 |
556 |
2.59e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.