Match details
Record ID: |
KJ729783.1 |
Database: |
nt |
Go to original record |
Description: |
Reaumuria mucronata tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Reaumuria mucronata |
Original size: |
1026 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
11 |
580 |
+ |
570 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggcatgctg
51 actagtaggg aacctactaa gtgataactt tcaaattcag agaaaccctg
101 gaattaataa aaatgggcaa tcctgagcca actcctgttt tcaaaaaata
151 aaaaaaaatt attaaagtga gaagaaatga tggataggtg cagagactca
201 acggaagctg ttctaacaaa tggagttgac tgcgttgtta taagaattct
251 tccatcaaaa cttaaaaaaa gatcaagaca aaccctatat ttagataaat
301 acgtactgaa atactctaaa aaataaaaaa cgtcttaata ataatggcgg
351 ccaaaatatg tctttttata tgaaaaagcg gaagaatatt catttataaa
401 agtattcgct ccatggtctg atagatcttt tttttttacg aactgctcaa
451 tcggacgaga atgaagatag agtcccattc tacatgtcaa tactgacaac
501 aatgaaattt atagtatgag gaaaatccgt cgactttaga aatcgtgagg
551 gttcaagtcc ctctatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.57e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
570 |
551 |
2.57e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.