Match details
Record ID: |
KF357588.1 |
Database: |
nt |
Go to original record |
Description: |
Cauliflower mosaic virus isolate IRNWKBi7, complete genome. |
Taxon: |
Cauliflower mosaic virus |
Original size: |
8018 bp |
View other 4 matches for this record
View other 10854 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
2 |
0 |
7164 |
7370 |
+ |
207 bp |
|
1 gcgcctacca atgccatcaa tgcgataaag gaaaggctat cgttgaagat
51 aagcctgccg acagtggtcc agcagacagc tcgggaccac ccaccacgaa
101 agaaaatgtg gaaaaagaag atgccgtttc cactacgaca tcttcaaagc
151 aagtggattg atgtgatatc tccactgacg taagggatga cgcacaatcc
201 cactatc
View other 3 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerB |
100.0 |
20 bp |
0 |
0 |
207 |
188 |
9.87e-09 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.