Match details
Record ID: |
MN810982.1 |
Database: |
nt |
Go to original record |
Description: |
Fritillaria davidii chloroplast, complete genome. |
Taxon: |
Fritillaria davidii |
Original size: |
152888 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
45399 |
46006 |
+ |
608 bp |
|
1 cgaaatcggt agacgctacg gacttgatta aattgagcct tggtatggaa
51 acctgctaag tgataacttc caaattcaga gaaaccccgg aattaaaaat
101 gggcaatcct gagccaaatc tttattttga aaaaagggtt taatttatag
151 tttttataat ataaaactac aataaaaaaa gataggtgca gagactcaat
201 ggaagctgtt ctaacgaatg aagttgatta cgttgcgctg gtagccggaa
251 tccttctatc aaaattacgg agaggatgcc cgccctatat acgtatatat
301 acatactgac atagtaaacg attgattaat cgcggcccga atccattata
351 atatatatat atatgaaaaa tttaagagtt attgtaaatc tattccatat
401 tccaatcaaa gtttaaggaa gaatcgaata ttcagtgatc aaattattca
451 ttccagagtc tgtatagatc tttttaaaaa ctgattattc ggacgagaat
501 aaagagagag tcccattcta cgtgtcaata ccgacaacaa tgaaatttat
551 agtaaaagga aaatccgtcg actttataag tcgtgagggt tcaagtccct
601 ctatcccc
View other 2 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.74e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
608 |
589 |
2.74e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.