Match details
Record ID: |
AJ007624.1 |
Database: |
nt |
Go to original record |
Description: |
Agrobacterium tumefaciens nos terminator with artifical insert of 80 bp |
Taxon: |
Agrobacterium tumefaciens |
Original size: |
358 bp |
View other 3 matches for this record
View other 15584 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
2 |
2 |
69 |
152 |
- |
84 bp |
|
1 ctatctgtgc atgacgttat ttatgagatg ggtttttatg attagagtcc
51 cgcaattata catttaatac gcgatagaaa acaa
View other 1 match with an identical amplicon
Primers and probe alignment: |
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
18 bp |
0 |
0 |
8 |
25 |
7.17e-08 |
primerB |
100.0 |
25 bp |
0 |
0 |
84 |
60 |
9.20e-12 |
probe |
100.0 |
28 bp |
0 |
0 |
28 |
55 |
2.28e-13 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.