Match details
Record ID: |
DQ780877.1 |
Database: |
nt |
Go to original record |
Description: |
Reporter vector pBNP1, complete sequence. |
Taxon: |
Reporter vector pBNP1 |
Original size: |
6985 bp |
View other 28 matches for this record
View other 1572 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
4784 |
4948 |
+ |
165 bp |
|
1 ttcccctcgg tatccaatta gagtctcata ttcactctca atccaaataa
51 tctgcaccgg atccgtcgat cgtttcgcat gattgaacaa gatggattgc
101 acgcaggttc tccggccgct tgggtggaga ggctattcgg ctatgactgg
151 gcacaacaga caatc
Primers and probe alignment: |
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
23 bp |
0 |
0 |
1 |
23 |
2.04e-10 |
primerB |
100.0 |
22 bp |
0 |
0 |
165 |
144 |
6.90e-10 |
probe |
100.0 |
25 bp |
0 |
0 |
142 |
118 |
1.76e-11 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.