Match details
Record ID: |
U33175.1 |
Database: |
nt |
Go to original record |
Description: |
Oryza sativa sucrose phosphate synthase gene, complete cds. |
Taxon: |
Oryza sativa |
Original size: |
7150 bp |
View other 1 match for this record
Method: |
QL-TAX-OS-006 |
Go to GMOMETHODS record |
Description: | Qualitative PCR method for detection of rice sucrose-phosphate synthase gene (Jiang et al., 2009). |
Target: | rice sucrose-phosphate synthase |
View other 10 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1055 |
1331 |
+ |
277 bp |
|
1 ttgcgcctga acggatatct ttcagtttgt aaccaccgga tgacgcacgg
51 acggctcgga tcatcccgaa aagatcaacc gcggcgcgag cacgagacca
101 ccgtgggccc catggcccac cgacttacac aatctctccc actgccatgc
151 gggcccacac cagcaacagt ccagtccaga gagccccgaa ctcctccaaa
201 cccggggggc cacaccctgc cacgtgtcac ccgccagcct ccctctcatc
251 ctctctctcc tcgtccagtg cttctcc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
18 bp |
0 |
0 |
1 |
18 |
1.47e-07 |
primerB |
100.0 |
19 bp |
0 |
0 |
277 |
259 |
4.44e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.