Match details
Record ID: |
AB235007.1 |
Database: |
nt |
Go to original record |
Description: |
Cayratia trifolia chloroplast DNA, trnL-trnF IGS, isolate: 7488, partial sequence. |
Taxon: |
Causonis trifolia |
Original size: |
998 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
2 |
572 |
+ |
571 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct taatatggaa
51 acctactaag tgataacttt caaattcagg gaaaccctgg aataaaaaat
101 gggcaatcct gagccaaatc ctgttttccg aaaaccagaa aacgctaata
151 aaaagggata ggtgcagaga ctcaatggaa gctgttctaa caaaaacaaa
201 tggagttgac tatgttacgt tgttaaacga atccttgcat caaaactcca
251 gaaccagaaa ggatgaagga taaacctaga tacatagtga aatatcaaat
301 gattaatgat ggctcgaatc tttatttttt tatatgaaaa attaaagaat
351 tgttgtaaat cgattccaag ttgaagaaag aaaagaatcg aatattcatt
401 gatcaaatca gtcactccat agtccgatag atcttttgaa gaaatgatta
451 atcagcggag aataaagaga gagtcccatt ctacatgtca ataccgacaa
501 caatgaaatt tatagtaaga ggaaaatccg tcgactttaa aaatcgtgag
551 ggttcaagtc cctctatccc c
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.57e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
571 |
552 |
2.57e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.