Match details
Record ID: |
AJ874965.1 |
Database: |
nt |
Go to original record |
Description: |
Rytigynia parvifolia chloroplast trnT-trnL IGS (partial), tRNA-Leu (UAA) gene and trnL-trnF IGS (partial), specimen voucher Luke 8345 (UPS) |
Taxon: |
Rytigynia parvifolia |
Original size: |
1696 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
781 |
1338 |
+ |
558 bp |
|
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51 acccactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101 aaggggcaac cctgagccaa atcctgtttt ccgaaaccaa aggttcagaa
151 agtgaaaaag ggataggtgc agagactcaa tggaagttgt tctaacaaat
201 ggagttggct gcgttagtaa agaaatcttt ccatcgaaaa ttccgaaagg
251 ataaaacgta tacgtattga atactatatc aaaatcaaat gattaatgac
301 gcctcgactg aatccgtatt ttttatatga aaacggaaga attggtgtga
351 atagattcca cattgaagaa agaatcgaat attcattgat taaatgattc
401 actccatagt ctgatagatc ttttcaagaa ttgattaatc ggacgagaat
451 aaagatagag tcccgttcta catgtcaatg tcggcaacaa tgaaatttat
501 agtaagagga aaatccgtcg actttaaaaa tcgtgagggt tcaagtccct
551 ctatcccc
View other 2 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.51e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
558 |
539 |
2.51e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.