Match details
Record ID: |
AJ874963.1 |
Database: |
nt |
Go to original record |
Description: |
Rytigynia monantha chloroplast trnT-trnL IGS (partial), tRNA-Leu (UAA) gene and trnL-trnF IGS (partial), specimen voucher Hedren et al. 308 (UPS) |
Taxon: |
Rytigynia monantha |
Original size: |
1739 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
815 |
1371 |
+ |
557 bp |
|
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51 acccactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101 aaggggcaat cctgagccaa atcctgtttt ccgaaaccaa aggttcataa
151 agtgaaaaag ggataggtgc agagactcaa tggaagttgt tctaacaaat
201 ggagttggct gcgttagtaa agaaatcttt ccatcgaaaa ttccgaaagg
251 ataaaacgta tacgtattga atactatatc aaatgattaa tttaatgacg
301 cctcgactta atccgtattt tttatatgaa aacggaagaa ttggtgtgaa
351 tagattccac attgaagaaa gaatcgaata ttcattgatt aaatgattca
401 ctccatagtc tgatagatct tttcaagaat tgattaatcg gacgagaata
451 aagatagagt cccgttctac atgtcaatgt cggcaacaat gaaatttata
501 gtaagaggaa aatccgtcga ctttaaaaat cgtgagggtt caagtccctc
551 tatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.51e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
557 |
538 |
2.51e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.