Match details
Record ID: |
AY836539.1 |
Database: |
nt |
Go to original record |
Description: |
Jasminum lanceolarium tRNA-Leu (trnL) and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Jasminum lanceolarium |
Original size: |
983 bp |
View other 1 match for this record
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
1 |
11 |
608 |
+ |
598 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tggtaacttt caaattcaga gaaaccccgg aattaataaa
101 aatgggcaat cctgagccaa atcctgtttt ccccaaacaa gagttcagaa
151 agaaaaaagg gataggtgca gagactcaat ggaagctgtt ctaacaaatg
201 gagtggacta ggttggtaga ggaatctttc catcgcaact tcagaaagga
251 tgaaggataa attgtatata ttgaatacta tatcaaatga ttaatgacga
301 ctcgaatctc tatctgtatt tttttacatg aaaaatggaa gattgattcc
351 attttgaaga aagaatcgaa tattcattga tcaaatcatt cactccacag
401 tctgatagat cttttaaaaa actgattaat cggacgagaa taaagataga
451 gtcccattct acatgtcaat accggcaaca atgaaattta tagtaaaagg
501 aaaatccgtc gactttaaaa atcgtgaggg ttcaagtccc tctatcccca
551 aaaagcctat ttgacttccc aagtgagggt tcaaagtccc tctatccc
Primers and probe alignment: |
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.69e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
549 |
530 |
2.69e-08 |
primerB |
95.0 |
20 bp |
0 |
1 |
598 |
579 |
4.51e-06 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.