Match details
| Record ID: |
HQ233646.1 |
| Database: |
nt |
Go to original record |
| Description: |
Gossypium hirsutum transgenic clone LLcotton25 phosphinothricin N-acetyltransferase gene, complete cds. |
| Taxon: |
Gossypium hirsutum |
| Original size: |
4644 bp |
View other 33 matches for this record
View other 15584 matches for this method
| Predicted amplification details: |
| Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
| 0 |
0 |
3825 |
3908 |
+ |
84 bp |
|
1 catgtaatgc atgacgttat ttatgagatg ggtttttatg attagagtcc
51 cgcaattata catttaatac gcgatagaaa acaa
View other 30799 matches with an identical amplicon
| Primers and probe alignment: |
| Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
| primerA |
100.0 |
25 bp |
0 |
0 |
1 |
25 |
9.20e-12 |
| primerB |
100.0 |
25 bp |
0 |
0 |
84 |
60 |
9.20e-12 |
| probe |
100.0 |
28 bp |
0 |
0 |
28 |
55 |
2.28e-13 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.
