Match details
| Record ID: |
HM439359.1 |
| Database: |
nt |
Go to original record |
| Description: |
Plant binary vector pXNS1pat-Strep, complete sequence. |
| Taxon: |
Plant binary vector pXNS1pat-Strep |
| Original size: |
5316 bp |
View other 18 matches for this record
View other 10854 matches for this method
| Predicted amplification details: |
| Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
| 1 |
0 |
5068 |
5263 |
+ |
196 bp |
|
1 gcttctacaa atgccatcat tgcgataaag gaaaggctat cgttcaagaa
51 tgcctctacc gacagtggtc ccaaagatgg acccccaccc acgaggaaca
101 tcgtggaaaa agaagacgtt ccaaccacgt cttcaaagca agtggattga
151 tgtgatatct ccactgacgt aagggatgac gcacaatccc actatc
View other 185 matches with an identical amplicon
| Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
| primerA |
94.7 |
19 bp |
1 |
0 |
1 |
19 |
1.45e-06 |
| primerB |
100.0 |
20 bp |
0 |
0 |
196 |
177 |
9.33e-09 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.
