Match details
Record ID: |
AB542059.1 |
Database: |
nt |
Go to original record |
Description: |
Moss transformation vector pTN186 aph(4) gene for amynoglycoside phosphotransferase (4), complete cds. |
Taxon: |
Moss transformation vector pTN186 |
Original size: |
2395 bp |
View other 5 matches for this record
View other 10536 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
368 |
490 |
+ |
123 bp |
|
1 ccacgtcttc aaagcaagtg gattgatgtg acatctccac tgacgtaagg
51 gatgacgcac aatcccacta tccttcgcaa gacccttcct ctatataagg
101 aagttcattt catttggaga gga
View other 3591 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
21 bp |
0 |
0 |
1 |
21 |
1.84e-09 |
primerB |
100.0 |
25 bp |
0 |
0 |
123 |
99 |
1.30e-11 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.