Match details
Record ID: |
AB070923.1 |
Database: |
nt |
Go to original record |
Description: |
Taraxacum laevigatum chloroplast DNA, tRNA-Thr, trnT-trnL intergenic spacer, tRNA-Leu, trnL-trnF intergenic spacer, tRNA-Phe region. |
Taxon: |
Taraxacum laevigatum |
Original size: |
1488 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
599 |
1125 |
+ |
527 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acttactaag tgataacttt caaattcaga ggaaccctgg aattaataaa
101 aatgggcaat cctgagccaa atcacgtttt ccgaaaacaa acaaaggttc
151 agaaagcgaa aataaaaaag gataggtgca gagactcgat ggaagctgtt
201 ctaacgaatg gagtttattt tcttacgtta atagaggaat ccttctatcg
251 aaacttcaga aaagatgaag gataaacctg tagacataat gtagacataa
301 tacagaagaa ttgttgtcaa tcgattccat attgaagaaa gaatcgaata
351 ttcattgata aaaccattca ctccataatc tgatagatct tttgaagaac
401 tgattaatcg gacgagaata aagatagagt cccgttctac atgtcaatac
451 cggcaacaat gaaatttata gtaagaggaa aatccgtcga tttcaaaaat
501 cgtgagggtt caagtccctc tatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.37e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
527 |
508 |
2.37e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.