Match details
Record ID: |
CU462826.2 |
Database: |
nt |
Go to original record |
Description: |
Arabidopsis thaliana T-DNA insertion sequence GK-052H10-T24P13 |
Taxon: |
Arabidopsis thaliana |
Original size: |
11331 bp |
View other 6 matches for this record
View other 10536 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
6162 |
6284 |
+ |
123 bp |
|
1 ccacgtcttc aaagcaagtg gattgatgtg atatctccac tgacgtaagg
51 gatgacgctc aatcccacta tccttcgcaa gacccttcct ctatataagg
101 aagttcattt catttggaga gga
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
21 bp |
0 |
0 |
1 |
21 |
1.84e-09 |
primerB |
100.0 |
25 bp |
0 |
0 |
123 |
99 |
1.30e-11 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.