Match details
Record ID: |
LT725408.1 |
Database: |
nt |
Go to original record |
Description: |
Gateway expression vector pAGRIKOLA-CATMA4a19057, complete sequence |
Taxon: |
Gateway expression vector pAGRIKOLA-CATMA4a19057 |
Original size: |
9623 bp |
View other 15 matches for this record
View other 3921 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
4768 |
4861 |
- |
94 bp |
|
1 aagcacatac gtcagaaacc attattgcgc gttcaaaagt cgcctaaggt
51 cactatcagc tagcaaatat ttcttgtcaa aaatgctcca ctga
View other 3895 matches with an identical amplicon
Primers and probe alignment: |
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
26 bp |
0 |
0 |
1 |
26 |
3.03e-12 |
primerB |
100.0 |
24 bp |
0 |
0 |
94 |
71 |
3.54e-11 |
probe |
100.0 |
26 bp |
0 |
0 |
28 |
53 |
3.03e-12 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.