Match details

Record ID: NRN_A18053
Database: nrnl1 Go to original record
Description: DNA for transforming monocotyledonous plants Sequence 1 from Patent WO9321335. Sequence 4 from Patent EP0955371. Sequence 4 from patent US 6002070. Sequence 4 from patent US 6074877. Sequence 4 from patent US 5641664. Sequence 1 from patent US 5679558. Sequence 4 from patent US 5712135.
Taxon: unidentified
Original size: 4883 bp
Patents: WO9209696 (lens, espacenet) WO9321335 (lens, espacenet) EP0955371 (lens, espacenet) US6002070 (lens, espacenet) US6074877 (lens, espacenet) US5641664 (lens, espacenet) US5679558 (lens, espacenet) US5712135 (lens, espacenet)

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Method: QL-ELE-00-009 Go to GMOMETHODS record
View in JRC GMO-Matrix
Description:Qualitative PCR method for detection of nopaline synthase terminator (Lipp et al.,2001).
Target:T-nos

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Predicted amplification details:
Mismatches Gaps From To Strand Amplicon size
0 0 2475 2592 + 118 bp

Amplicon: 118 bp
1     gcatgacgtt atttatgaga tgggttttta tgattagagt cccgcaatta
51    tacatttaat acgcgataga aaacaaaata tagcgcgcaa actaggataa
101   attatcgcgc gcggtgtc 

View other 15178 matches with an identical amplicon


Primers alignment:
Primer/Probe % Identity Length Mismatches Gaps From To Score
primerA 100.0 24 bp 0 0 1 24 4.22e-11
primerB 100.0 24 bp 0 0 118 95 4.22e-11


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.