Match details

Record ID: NRN_DL470953
Database: nrnl1 Go to original record
Description: COMPOSITIONS AND METHODS FOR MODULATING LIGNIN OF A PLANT. MODIFICATION OF PLANT LIGNIN CONTENT. Sequence 59 from patent US 7402428. Sequence 59 from patent US 7456338. Sequence 809 from patent US 7799906. Sequence 59 from patent US 7807880. Sequence 59 from patent US 8030545. JP 2011055839-A/59: MODIFICATION OF PLANT LIGNIN CONTENT.
Taxon: unidentified
Original size: 12290 bp
Patents: JP2008513030 (lens, espacenet) JP2008513025 (lens, espacenet) US7402428 (lens, espacenet) US2006101535 (lens, espacenet) US7456338 (lens, espacenet) US2006130183 (lens, espacenet) US7799906 (lens, espacenet) US7807880 (lens, espacenet) US8030545 (lens, espacenet) JP2011055839 (lens, espacenet)

View other 13 matches for this record


Method: QL-ELE-00-011 Go to GMOMETHODS record
View in JRC GMO-Matrix
Description:Qualitative PCR method for detection of nopaline synthase terminator.
Target:T-nos

View other 15584 matches for this method


Predicted amplification details:
Mismatches Gaps From To Strand Amplicon size
0 0 11957 12040 + 84 bp

Amplicon: 84 bp
1     catgtaatgc atgacgttat ttatgagatg ggtttttatg attagagtcc
51    cgcaattata catttaatac gcgatagaaa acaa 

View other 30799 matches with an identical amplicon


Primers and probe alignment:
Primer/Probe % Identity Length Mismatches Gaps From To Score
primerA 100.0 25 bp 0 0 1 25 9.20e-12
primerB 100.0 25 bp 0 0 84 60 9.20e-12
probe 100.0 28 bp 0 0 28 55 2.28e-13


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.