Match details

Record ID: NRN_DD139994
Database: nrnl1 Go to original record
Description: BIOLUMINESCENT PLANTS AND METHODS OF MAKING SAME.
Taxon: unidentified
Original size: 11478 bp
Patents: JP2005503122 (lens, espacenet)

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Method: QT-ELE-00-004 Go to GMOMETHODS record
View in JRC GMO-Matrix
Description:Quantitative PCR method for detection of Cauliflower Mosaic Virus 35S promoter
Target:CaMV P-35S

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Predicted amplification details:
Mismatches Gaps From To Strand Amplicon size
2 1 10466 10549 - 84 bp

Amplicon: 84 bp
1     gcctctgccg acagtggtcc caaaagatgg anccccaccc acgaggagca
51    tcgtggaaaa aagaagacgt tccaacccac gtct 

View other 3 matches with an identical amplicon


Primers and probe alignment:
Primer/Probe % Identity Length Mismatches Gaps From To Score
primerA 100.0 18 bp 0 0 1 18 4.66e-08
primerB 95.5 22 bp 0 1 84 63 6.09e-08
probe 95.2 21 bp 1 0 23 43 1.69e-08


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.