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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Match details

Record ID: NRN_DL470957
Database: nrnl1 Go to original record
Description: COMPOSITIONS AND METHODS FOR MODULATING LIGNIN OF A PLANT. MODIFICATION OF PLANT LIGNIN CONTENT. Sequence 63 from patent US 7402428. Sequence 63 from patent US 7456338. Sequence 813 from patent US 7799906. Sequence 63 from patent US 7807880. Sequence 63 from patent US 8030545. JP 2011055839-A/63: MODIFICATION OF PLANT LIGNIN CONTENT.
Taxon: unidentified
Original size: 12509 bp
Patents: JP2008513030 (lens, espacenet) JP2008513025 (lens, espacenet) US7402428 (lens, espacenet) US2006101535 (lens, espacenet) US7456338 (lens, espacenet) US2006130183 (lens, espacenet) US7799906 (lens, espacenet) US7807880 (lens, espacenet) US8030545 (lens, espacenet) JP2011055839 (lens, espacenet)

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Method: QL-ELE-00-003 Go to GMOMETHODS record
View in JRC GMO-Matrix
Description:Qualitative PCR method for detection of Neomycin phosphotransferase II gene (BVL L 00.00-31, 1998)
Target:nptII

View other 58813 matches for this method

Predicted amplification details:
Mismatches Gaps From To Strand Amplicon size
0 0 5628 5800 - 173 bp
Amplicon: 173 bp 
1     ggatctcctg tcatctcacc ttgctcctgc cgagaaagta tccatcatgg
51    ctgatgcaat gcggcggctg catacgcttg atccggctac ctgcccattc
101   gaccaccaag cgaaacatcg catcgagcga gcacgtactc ggatggaagc
151   cggtcttgtc gatcaggatg atc

View other 57974 matches with an identical amplicon

Primers alignment:
Primer/Probe % Identity Length Mismatches Gaps From To Score
primerA 100.0 16 bp 0 0 1 16 1.08e-06
primerB 100.0 16 bp 0 0 173 158 1.08e-06

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.