Match details
Record ID:
NRN_DJ058152
Database:
nrnl1
Go to original record
Description:
Corn Plant MON88017 and Compositions and Methods for Detection Thereof. Sequence 5 from patent US 8212113. JP 2012070734-A/5: Corn Plant MON88017 and Compositions and Methods for Detection Thereof.
Taxon:
unidentified
Original size:
7450 bp
Patents:
JP2007513641 (lens , espacenet )
US8212113 (lens , espacenet )
JP2012070734 (lens , espacenet )
View other 17 matches for this record
View other 34 matches for this method
Predicted amplification details:
Mismatches
Gaps
From
To
Strand
Amplicon size
0
1
7165
7258
+
94 bp
1 gagcaggacc tgcagaagct agcttgatgg ggatcagatt gtcgtttccc
51 gccttcagtt taaacagagt cgggtttgga tggtcaactc cggc
View other 13 matches with an identical amplicon
Primers and probe alignment:
Primer/Probe
% Identity
Length
Mismatches
Gaps
From
To
Score
primerA
100.0
20 bp
0
0
1
20
4.68e-09
primerB
100.0
17 bp
0
0
93
77
1.89e-07
probe
100.0
29 bp
0
0
47
75
7.05e-14
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.