Match details
Record ID:
NRN_DJ058152
Database:
nrnl1
Go to original record
Description:
Corn Plant MON88017 and Compositions and Methods for Detection Thereof. Sequence 5 from patent US 8212113. JP 2012070734-A/5: Corn Plant MON88017 and Compositions and Methods for Detection Thereof.
Taxon:
unidentified
Original size:
7450 bp
Patents:
JP2007513641 (lens , espacenet )
US8212113 (lens , espacenet )
JP2012070734 (lens , espacenet )
View other 17 matches for this record
View other 10904 matches for this method
Predicted amplification details:
Mismatches
Gaps
From
To
Strand
Amplicon size
0
0
4214
4292
+
79 bp
1 cgtcttcaaa gcaagtggat tgatgtgata tctccactga cgtaagggat
51 gacgcacaat cccactatcc ttcgcaaga
View other 6569 matches with an identical amplicon
Primers and probe alignment:
Primer/Probe
% Identity
Length
Mismatches
Gaps
From
To
Score
primerA
100.0
22 bp
0
0
1
22
3.41e-10
primerB
100.0
22 bp
0
0
79
58
3.41e-10
probe
100.0
26 bp
0
0
31
56
2.52e-12
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.