Match details
| Record ID: |
NRN_DD123313 |
| Database: |
nrnl1 |
Go to original record |
| Description: |
Plant Artificial Chromosomes, Uses thereof, and Methods of Preparing Plant Artificial Chromosomes. CHROMOSOME-BASED PLATFORMS. CHROMOSOME-BASED PLATFORMS. Sequence 109 from patent US 7521240. JP 2009254382-A/20: Plant Artificial Chromosomes, Uses thereof, and Methods of Preparing Plant Artificial Chromosomes. |
| Taxon: |
unidentified |
| Original size: |
14627 bp |
| Patents: |
JP2005500827 (lens, espacenet)
JP2005503778 (lens, espacenet)
JP2009017884 (lens, espacenet)
US7521240 (lens, espacenet)
US2005181506 (lens, espacenet)
JP2009254382 (lens, espacenet)
|
View other 30 matches for this record
| Method: |
QL-ELE-00-012 |
Go to GMOMETHODS record |
|
View in JRC GMO-Matrix
|
|
| Description: | Qualitative duplex PCR method for detection of Cauliflower Mosaic Virus 35S promoter and nopaline synthase terminator (partim CaMV P-35S) (Waiblinger et al., 2008). |
| Target: | CaMV P-35S |
View other 15625 matches for this method
| Predicted amplification details: |
| Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
| 0 |
0 |
7173 |
7254 |
- |
82 bp |
|
1 gcctctgccg acagtggtcc caaagatgga cccccaccca cgaggagcat
51 cgtggaaaaa gaagacgttc caaccacgtc tt
View other 26489 matches with an identical amplicon
| Primers and probe alignment: |
| Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
| primerA |
100.0 |
18 bp |
0 |
0 |
1 |
18 |
4.54e-08 |
| primerB |
100.0 |
22 bp |
0 |
0 |
82 |
61 |
3.55e-10 |
| probe |
100.0 |
22 bp |
0 |
0 |
21 |
42 |
3.55e-10 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.
