Match details
| Record ID: |
NRN_DD123313 |
| Database: |
nrnl1 |
Go to original record |
| Description: |
Plant Artificial Chromosomes, Uses thereof, and Methods of Preparing Plant Artificial Chromosomes. CHROMOSOME-BASED PLATFORMS. CHROMOSOME-BASED PLATFORMS. Sequence 109 from patent US 7521240. JP 2009254382-A/20: Plant Artificial Chromosomes, Uses thereof, and Methods of Preparing Plant Artificial Chromosomes. |
| Taxon: |
unidentified |
| Original size: |
14627 bp |
| Patents: |
JP2005500827 (lens, espacenet)
JP2005503778 (lens, espacenet)
JP2009017884 (lens, espacenet)
US7521240 (lens, espacenet)
US2005181506 (lens, espacenet)
JP2009254382 (lens, espacenet)
|
View other 30 matches for this record
View other 15584 matches for this method
| Predicted amplification details: |
| Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
| 0 |
0 |
14137 |
14220 |
+ |
84 bp |
|
1 catgtaatgc atgacgttat ttatgagatg ggtttttatg attagagtcc
51 cgcaattata catttaatac gcgatagaaa acaa
View other 30799 matches with an identical amplicon
| Primers and probe alignment: |
| Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
| primerA |
100.0 |
25 bp |
0 |
0 |
1 |
25 |
9.20e-12 |
| primerB |
100.0 |
25 bp |
0 |
0 |
84 |
60 |
9.20e-12 |
| probe |
100.0 |
28 bp |
0 |
0 |
28 |
55 |
2.28e-13 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.
