Match details

Record ID: NRN_AR215118
Database: nrnl1 Go to original record
Description: Sequence 22 from patent US 6410266. Sequence 23 from patent US 6410266. Sequence 28 from patent US 6410266. Sequence 22 from patent US 6541221. Sequence 23 from patent US 6541221. Sequence 28 from patent US 6541221. Sequence 22 from patent US 6602686. Sequence 23 from patent US 6602686. Sequence 28 from patent US 6602686. Sequence 22 from patent US 6623958. Sequence 23 from patent US 6623958. Sequence 28 from patent US 6623958. Sequence 22 from patent US 6670185. Sequence 23 from patent US 6670185. Sequence 28 from patent US 6670185. Sequence 22 from patent US 6740503. Sequence 23 from patent US 6740503. Sequence 28 from patent US 6740503. Sequence 22 from patent US 6897066. Sequence 23 from patent US 6897066. Sequence 28 from patent US 6897066. Sequence 22 from patent US 7033782. Sequence 23 from patent US 7033782. Sequence 28 from patent US 7033782. Sequence 22 from patent US 7316923. Sequence 23 from patent US 7316923. Sequence 28 from patent US 7316923. Compositions and Methods for Non-targeted Activation of Endogenous Genes. Compositions and Methods for Non-targeted Activation of Endogenous Genes. Compositions and Methods for Non-targeted Activation of Endogenous Genes. Sequence 22 from patent US 7419828. Sequence 23 from patent US 7419828. Sequence 28 from patent US 7419828. Sequence 22 from patent US 7569220. Sequence 23 from patent US 7569220. Sequence 28 from patent US 7569220. Sequence 22 from patent US 7842792. Sequence 23 from patent US 7842792. Sequence 28 from patent US 7842792.
Taxon: unidentified
Original size: 9737 bp
Patents: US6410266 (lens, espacenet) US6410266 (lens, espacenet) US6410266 (lens, espacenet) US6410266 (lens, espacenet) US6410266 (lens, espacenet) US6410266 (lens, espacenet) US6541221 (lens, espacenet) US6541221 (lens, espacenet) US6541221 (lens, espacenet) US6541221 (lens, espacenet) US6541221 (lens, espacenet) US6541221 (lens, espacenet) US6602686 (lens, espacenet) US6602686 (lens, espacenet) US6602686 (lens, espacenet) US6602686 (lens, espacenet) US6602686 (lens, espacenet) US6602686 (lens, espacenet) US6623958 (lens, espacenet) US6623958 (lens, espacenet) US6623958 (lens, espacenet) US6623958 (lens, espacenet) US6623958 (lens, espacenet) US6623958 (lens, espacenet) US6670185 (lens, espacenet) US6670185 (lens, espacenet) US6670185 (lens, espacenet) US6670185 (lens, espacenet) US6670185 (lens, espacenet) US6670185 (lens, espacenet) US6740503 (lens, espacenet) US6740503 (lens, espacenet) US6740503 (lens, espacenet) US6740503 (lens, espacenet) US6740503 (lens, espacenet) US6740503 (lens, espacenet) US6897066 (lens, espacenet) US6897066 (lens, espacenet) US6897066 (lens, espacenet) US6897066 (lens, espacenet) US6897066 (lens, espacenet) US6897066 (lens, espacenet) US7316923 (lens, espacenet) US7316923 (lens, espacenet) US7316923 (lens, espacenet) US7316923 (lens, espacenet) US7316923 (lens, espacenet) US7316923 (lens, espacenet) JP2004501601 (lens, espacenet) JP2004501601 (lens, espacenet) JP2004501601 (lens, espacenet) US7419828 (lens, espacenet) US2006105318 (lens, espacenet) US7419828 (lens, espacenet) US2006105318 (lens, espacenet) US7419828 (lens, espacenet) US2006105318 (lens, espacenet) US7569220 (lens, espacenet) US2007178585 (lens, espacenet) US7569220 (lens, espacenet) US2007178585 (lens, espacenet) US7569220 (lens, espacenet) US2007178585 (lens, espacenet) US7842792 (lens, espacenet) US7842792 (lens, espacenet) US7842792 (lens, espacenet)

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Method: QL-ELE-00-002 Go to GMOMETHODS record
View in JRC GMO-Matrix
Description:Qualitative PCR method for detection of Neomycin phosphotransferase II gene (ISO/FDIS 21569:2005).
Target:nptII

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Predicted amplification details:
Mismatches Gaps From To Strand Amplicon size
0 0 7450 7664 - 215 bp

Amplicon: 215 bp
1     ctcaccttgc tcctgccgag aaagtatcca tcatggctga tgcaatgcgg
51    cggctgcata cgcttgatcc ggctacctgc ccattcgacc accaagcgaa
101   acatcgcatc gagcgagcac gtactcggat ggaagccggt cttgtcgatc
151   aggatgatct ggacgaagag catcaggggc tcgcgccagc cgaactgttc
201   gccaggctca aggcg 

View other 57490 matches with an identical amplicon


Primers alignment:
Primer/Probe % Identity Length Mismatches Gaps From To Score
primerA 100.0 21 bp 0 0 1 21 3.06e-09
primerB 100.0 21 bp 0 0 215 195 3.06e-09


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.