Match details
Record ID:
NRN_DL470941
Database:
nrnl1
Go to original record
Description:
COMPOSITIONS AND METHODS FOR MODULATING LIGNIN OF A PLANT. MODIFICATION OF PLANT LIGNIN CONTENT. Sequence 49 from patent US 7402428. Sequence 49 from patent US 7456338. Sequence 796 from patent US 7799906. Sequence 49 from patent US 7807880. Sequence 49 from patent US 8030545. JP 2011055839-A/49: MODIFICATION OF PLANT LIGNIN CONTENT.
Taxon:
unidentified
Original size:
6629 bp
Patents:
JP2008513030 (lens , espacenet )
JP2008513025 (lens , espacenet )
US7402428 (lens , espacenet )
US2006101535 (lens , espacenet )
US7456338 (lens , espacenet )
US2006130183 (lens , espacenet )
US7799906 (lens , espacenet )
US7807880 (lens , espacenet )
US8030545 (lens , espacenet )
JP2011055839 (lens , espacenet )
View other 7 matches for this record
Method:
QL-ELE-00-013
Go to GMOMETHODS record
View in JRC GMO-Matrix
Description: Qualitative duplex PCR method for detection of Cauliflower Mosaic Virus 35S promoter and nopaline synthase terminator (partim T-nos) (Waiblinger et al., 2008).
Target: T-nos
View other 15584 matches for this method
Predicted amplification details:
Mismatches
Gaps
From
To
Strand
Amplicon size
0
0
3644
3727
-
84 bp
1 catgtaatgc atgacgttat ttatgagatg ggtttttatg attagagtcc
51 cgcaattata catttaatac gcgatagaaa acaa
View other 30799 matches with an identical amplicon
Primers and probe alignment:
Primer/Probe
% Identity
Length
Mismatches
Gaps
From
To
Score
primerA
100.0
25 bp
0
0
1
25
9.20e-12
primerB
100.0
25 bp
0
0
84
60
9.20e-12
probe
100.0
28 bp
0
0
28
55
2.28e-13
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.