European Commission logo
Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Match details

Record ID: NRN_AR215115
Database: nrnl1 Go to original record
Description: Sequence 19 from patent US 6410266. Sequence 19 from patent US 6541221. Sequence 19 from patent US 6602686. Sequence 19 from patent US 6623958. Sequence 19 from patent US 6670185. Sequence 19 from patent US 6740503. Sequence 19 from patent US 6897066. Sequence 19 from patent US 7033782. Sequence 19 from patent US 7316923. Compositions and Methods for Non-targeted Activation of Endogenous Genes. Sequence 19 from patent US 7419828. Sequence 19 from patent US 7569220. Sequence 19 from patent US 7842792.
Taxon: unidentified
Original size: 4644 bp
Patents: US6410266 (lens, espacenet) US6410266 (lens, espacenet) US6541221 (lens, espacenet) US6541221 (lens, espacenet) US6602686 (lens, espacenet) US6602686 (lens, espacenet) US6623958 (lens, espacenet) US6623958 (lens, espacenet) US6670185 (lens, espacenet) US6670185 (lens, espacenet) US6740503 (lens, espacenet) US6740503 (lens, espacenet) US6897066 (lens, espacenet) US6897066 (lens, espacenet) US7316923 (lens, espacenet) US7316923 (lens, espacenet) JP2004501601 (lens, espacenet) US7419828 (lens, espacenet) US2006105318 (lens, espacenet) US7569220 (lens, espacenet) US2007178585 (lens, espacenet) US7842792 (lens, espacenet)

View other 3 matches for this record

Method: QL-ELE-00-003 Go to GMOMETHODS record
View in JRC GMO-Matrix
Description:Qualitative PCR method for detection of Neomycin phosphotransferase II gene (BVL L 00.00-31, 1998)
Target:nptII

View other 58813 matches for this method

Predicted amplification details:
Mismatches Gaps From To Strand Amplicon size
0 0 3779 3951 + 173 bp
Amplicon: 173 bp 
1     ggatctcctg tcatctcacc ttgctcctgc cgagaaagta tccatcatgg
51    ctgatgcaat gcggcggctg catacgcttg atccggctac ctgcccattc
101   gaccaccaag cgaaacatcg catcgagcga gcacgtactc ggatggaagc
151   cggtcttgtc gatcaggatg atc

View other 57974 matches with an identical amplicon

Primers alignment:
Primer/Probe % Identity Length Mismatches Gaps From To Score
primerA 100.0 16 bp 0 0 1 16 1.08e-06
primerB 100.0 16 bp 0 0 173 158 1.08e-06

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.