European Commission logo
Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Match details

Record ID: NRN_AR238850
Database: nrnl1 Go to original record
Description: Sequence 6 from patent US 6468747. Sequence 6 from patent US 6933111. Glufosinate tolerant rice.
Taxon: unidentified
Original size: 1279 bp
Patents: US6468747 (lens, espacenet) US6468747 (lens, espacenet) US6933111 (lens, espacenet) US6933111 (lens, espacenet) JP2002528114 (lens, espacenet)

View other 4 matches for this record

Method: QT-EVE-OS-002 Go to GMOMETHODS record
View in JRC GMO-Matrix
Description:Quantitative PCR method for detection of rice event LLRICE62 (Mazzara et al., 2006).
Target:LLRICE62

View other 8 matches for this method

Predicted amplification details:
Mismatches Gaps From To Strand Amplicon size
0 0 572 659 + 88 bp
Amplicon: 88 bp 
1     agctggcgta atagcgaaga ggcccgcacc gattatttat acttttagtc
51    cacctggttt ttattgatag acgatgcacc cgttagca

View other 6 matches with an identical amplicon

Primers and probe alignment:
Primer/Probe % Identity Length Mismatches Gaps From To Score
primerA 100.0 22 bp 0 0 1 22 3.82e-10
primerB 100.0 21 bp 0 0 88 68 1.29e-09
probe 100.0 31 bp 0 0 25 55 5.52e-15

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.