Match details
Record ID:
NRN_CS104338
Database:
nrnl1
Go to original record
Description:
Sequence 6 from Patent WO2005049842. Improved targeted DNA insertion in plants. Sequence 6 from Patent EP2025756. Sequence 6 from patent US 7598365. JP 2011177191-A/5: Improved targeted DNA insertion in plants.
Taxon:
unidentified
Original size:
5345 bp
Patents:
WO2005049842 (lens , espacenet )
JP2007511232 (lens , espacenet )
EP2025756 (lens , espacenet )
US7598365 (lens , espacenet )
US2006282914 (lens , espacenet )
JP2011177191 (lens , espacenet )
View other 21 matches for this record
View other 1572 matches for this method
Predicted amplification details:
Mismatches
Gaps
From
To
Strand
Amplicon size
0
0
2027
2178
+
152 bp
1 ttcccctcgg tatccaatta gagtctcata ttcactctca atcaaagatc
51 cggcccatga tcatgtggat tgaacaagat ggattgcacg caggttctcc
101 ggccgcttgg gtggagaggc tattcggcta tgactgggca caacagacaa
151 tc
View other 32 matches with an identical amplicon
Primers and probe alignment:
Primer/Probe
% Identity
Length
Mismatches
Gaps
From
To
Score
primerA
100.0
23 bp
0
0
1
23
1.87e-10
primerB
100.0
22 bp
0
0
152
131
6.33e-10
probe
100.0
25 bp
0
0
129
105
1.62e-11
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.