Match details

Record ID: NRN_AX930605
Database: nrnl1 Go to original record
Description: Sequence 77 from Patent WO03087386. Sequence 61 from Patent WO2004024932. Sequence 69 from Patent WO2004024933. Sequence 69 from Patent WO2004024931. Sequence 8 from Patent WO2005059144. Sequence 6 from Patent WO2005059154. Sequence 6 from Patent WO2005059139. Sequence 25 from Patent WO2005059093. Sequence 4 from Patent WO2005116228. Sequence 6 from Patent WO2005121349. Sequence 64 from Patent WO2006069711. Sequence 64 from Patent EP1908841. Sequence 25 from Patent EP1908842. Sequence 8 from Patent EP1918378. Sequence 61 from patent US 7238502. Sequence 69 from patent US 7282357. Sequence 69 from patent US 7381549. P EF-TU Expression units. PSOD EXPRESSION UNITS. METHODS FOR THE PREPARATION OF A FINE CHEMICAL BY FERMENTATION. METHODS FOR THE PREPARATION OF LYSINE BY FERMENTATION OF CORYNEBACTERIUM GLUTAMICUM. METHODS FOR THE PREPARATION OF A FINE CHEMICAL BY FERMENTATION. MetH. MetA. MetF. Process for the production of sulfur-containing fine chemicals. METHODS FOR THE PREPARATION OF AFINE CHEMICAL BY FERMENTATION. P EF-TU-Expressionseinheiten. Psod-Expressionseinheiten. Fermentative production of fine chemicals. METHODS FOR THE PREPARATION OF A. METHODS FOR THE PREPARATION OF A. Methods for producing sulphurous fine chemicals. Method for the production by fermentation of sulphur-containing fine chemicals(METF). Method for zymotic production of fine chemicals containing sulphur (META). Method for zymotic production of fine chemicals containing sulphur (METY). Fermentative production of fine chemicals. MULTIPLE PROMOTERS AND THE USE THEREOF FOR GENE EXPRESSION. PSOD EXPRESSION UNITS. P EF-TU Expression units. METHODS FOR THE PREPARATION OF A FINE CHEMICAL BY FERMENTATION. Sequence 6 from Patent EP1939296. Sequence 77 from patent US 7485444. Sequence 25 from patent US 7785779. Sequence 64 from patent US 7968699. Sequence 25 from patent US 8044191. Sequence 6 from patent US 8048651. Sequence 8 from patent US 8071365. JP 2008212157-A/64: MULTIPLE PROMOTERS AND THE USE THEREOF FOR GENE EXPRESSION.
Taxon: unidentified
Original size: 5860 bp
Patents: WO03087386 (lens, espacenet) WO2004024932 (lens, espacenet) WO2004024933 (lens, espacenet) WO2004024931 (lens, espacenet) WO2005059144 (lens, espacenet) WO2005059154 (lens, espacenet) WO2005059139 (lens, espacenet) WO2005059093 (lens, espacenet) WO2005116228 (lens, espacenet) WO2005121349 (lens, espacenet) WO2006069711 (lens, espacenet) EP1908841 (lens, espacenet) EP1908842 (lens, espacenet) EP1918378 (lens, espacenet) US7238502 (lens, espacenet) US2006003425 (lens, espacenet) US7282357 (lens, espacenet) US2006068476 (lens, espacenet) US7381549 (lens, espacenet) US2005260721 (lens, espacenet) JP2007514425 (lens, espacenet) JP2007514426 (lens, espacenet) JP2007514436 (lens, espacenet) JP2007514437 (lens, espacenet) JP2007514439 (lens, espacenet) JP2005522218 (lens, espacenet) JP2008500823 (lens, espacenet) JP2008523834 (lens, espacenet) JP2008212154 (lens, espacenet) JP2008212155 (lens, espacenet) JP2008259505 (lens, espacenet) EP1939296 (lens, espacenet) US7485444 (lens, espacenet) US2006223149 (lens, espacenet) US7785779 (lens, espacenet) US7968699 (lens, espacenet) US8044191 (lens, espacenet) US8048651 (lens, espacenet) US8071365 (lens, espacenet) JP2008212157 (lens, espacenet)

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Method: QL-ELE-00-003 Go to GMOMETHODS record
View in JRC GMO-Matrix
Description:Qualitative PCR method for detection of Neomycin phosphotransferase II gene (BVL L 00.00-31, 1998)
Target:nptII

View other 58813 matches for this method


Predicted amplification details:
Mismatches Gaps From To Strand Amplicon size
0 0 2273 2445 + 173 bp

Amplicon: 173 bp
1     ggatctcctg tcatctcacc ttgctcctgc cgagaaagta tccatcatgg
51    ctgatgcaat gcggcggctg catacgcttg atccggctac ctgcccattc
101   gaccaccaag cgaaacatcg catcgagcga gcacgtactc ggatggaagc
151   cggtcttgtc gatcaggatg atc 

View other 57974 matches with an identical amplicon


Primers alignment:
Primer/Probe % Identity Length Mismatches Gaps From To Score
primerA 100.0 16 bp 0 0 1 16 1.08e-06
primerB 100.0 16 bp 0 0 173 158 1.08e-06


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.