Match details
Record ID:
NRN_CQ945862
Database:
nrnl1
Go to original record
Description:
Sequence 24 from Patent WO2004099447. Sequence 24 from patent US 7288643. Corn Event TC1507 and Methods for Detection Thereof. Sequence 24 from patent US 7417132. Sequence 24 from patent US 7435807. Sequence 24 from patent US 7449564. Sequence 24 from patent US 7514544. Sequence 24 from patent US 7989607. Sequence 3 from Patent EP2513326.
Taxon:
unidentified
Original size:
11361 bp
Patents:
WO2004099447 (lens , espacenet )
US7288643 (lens , espacenet )
US2005039226 (lens , espacenet )
JP2006525028 (lens , espacenet )
US7417132 (lens , espacenet )
US2008015346 (lens , espacenet )
US7435807 (lens , espacenet )
US7435807 (lens , espacenet )
US7449564 (lens , espacenet )
US2008132690 (lens , espacenet )
US7514544 (lens , espacenet )
US2008051569 (lens , espacenet )
US7989607 (lens , espacenet )
EP2513326 (lens , espacenet )
View other 19 matches for this record
Method:
QT-CON-00-005
Go to GMOMETHODS record
View in JRC GMO-Matrix
Description: Quantitative PCR method for detection of the junction between the phosphinothricin N-acetyltransferase gene and the CaMV 35S terminator.
Target: pat-CaMV T-35S
View other 222 matches for this method
Predicted amplification details:
Mismatches
Gaps
From
To
Strand
Amplicon size
0
0
8620
8768
+
149 bp
1 gccagttagg ccagttaccc agatctgagt cgacctgcag gcatgcccgc
51 tgaaatcacc agtctctctc tacaaatcta tctctctcta taataatgtg
101 tgagtagttc ccagataagg gaattagggt tcttataggg tttcgctca
View other 150 matches with an identical amplicon
Primers and probe alignment:
Primer/Probe
% Identity
Length
Mismatches
Gaps
From
To
Score
primerA
100.0
21 bp
0
0
1
21
2.09e-09
primerB
100.0
24 bp
0
0
149
126
5.39e-11
probe
100.0
22 bp
0
0
36
57
6.20e-10
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.