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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Match details

Record ID: NRN_CQ945862
Database: nrnl1 Go to original record
Description: Sequence 24 from Patent WO2004099447. Sequence 24 from patent US 7288643. Corn Event TC1507 and Methods for Detection Thereof. Sequence 24 from patent US 7417132. Sequence 24 from patent US 7435807. Sequence 24 from patent US 7449564. Sequence 24 from patent US 7514544. Sequence 24 from patent US 7989607. Sequence 3 from Patent EP2513326.
Taxon: unidentified
Original size: 11361 bp
Patents: WO2004099447 (lens, espacenet) US7288643 (lens, espacenet) US2005039226 (lens, espacenet) JP2006525028 (lens, espacenet) US7417132 (lens, espacenet) US2008015346 (lens, espacenet) US7435807 (lens, espacenet) US7435807 (lens, espacenet) US7449564 (lens, espacenet) US2008132690 (lens, espacenet) US7514544 (lens, espacenet) US2008051569 (lens, espacenet) US7989607 (lens, espacenet) EP2513326 (lens, espacenet)

View other 19 matches for this record

Method: QL-ELE-00-021 Go to GMOMETHODS record
View in JRC GMO-Matrix
Description:Qualitative PCR method for detection of phosphinothricin N-acetyltransferase (pat) gene (Barbau-Piednoir et al., 2014).
Target:pat

View other 1706 matches for this method

Predicted amplification details:
Mismatches Gaps From To Strand Amplicon size
0 0 10167 10275 - 109 bp
Amplicon: 109 bp 
1     ccgcggtttg tgatatcgtt aaccattaca ttgagacgtc tacagtgaac
51    tttaggacag agccacaaac accacaagag tggattgatg atctagagag
101   gttgcaaga

View other 1557 matches with an identical amplicon

Primers alignment:
Primer/Probe % Identity Length Mismatches Gaps From To Score
primerA 100.0 20 bp 0 0 1 20 5.47e-09
primerB 100.0 25 bp 0 0 109 85 1.21e-11

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.