Match details

Record ID: NRN_AX467608
Database: nrnl1 Go to original record
Description: Sequence 18 from Patent WO0234926. Sequence 18 from Patent EP1867724. Sequence 18 from patent US 7049485. Sequence 18 from patent US 7371926. Methods for blocking plant pathogen invasion, and strategy to obtain fungal/bacteria resistant plants. Sequence 18 from patent US 7569745. Sequence 18 from patent US 7423195. Sequence 18 from patent US 7696411. Sequence 67 from patent US 8022272. Sequence 18 from patent US 8093456.
Taxon: unidentified
Original size: 835 bp
Patents: WO0234926 (lens, espacenet) EP1867724 (lens, espacenet) EP1867724 (lens, espacenet) US7371926 (lens, espacenet) US2006179513 (lens, espacenet) WO2010107126 (lens, espacenet) US7569745 (lens, espacenet) US2008235830 (lens, espacenet) US7423195 (lens, espacenet) US2006185037 (lens, espacenet) US7696411 (lens, espacenet) US8022272 (lens, espacenet) US8093456 (lens, espacenet)

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Method: QL-ELE-00-022 Go to GMOMETHODS record
View in JRC GMO-Matrix
Description:Qualitative PCR method for detection of phosphinothricin N-acetyltransferase (bar) gene (Barbau-Piednoir et al., 2014).
Target:bar

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Predicted amplification details:
Mismatches Gaps From To Strand Amplicon size
0 0 231 299 + 69 bp

Amplicon: 69 bp
1     cgtcaaccac tacatcgaga caagcacggt caacttccgt accgagccgc
51    aggaaccgca ggagtggac 

View other 2531 matches with an identical amplicon


Primers alignment:
Primer/Probe % Identity Length Mismatches Gaps From To Score
primerA 100.0 23 bp 0 0 1 23 8.68e-11
primerB 100.0 19 bp 0 0 69 51 1.13e-08


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.