Match details
Record ID: NRN_CS566040
Database:
nrnl1
Go to original record
Description:
Sequence 27 from Patent WO2006039376. Sequence 27 from patent US 7323556. CORN EVENT DAS-59122-7 AND METHODS FOR DETECTION THEREOF. Sequence 27 from patent US 7695914. Sequence 27 from patent US 7696341. Sequence 27 from patent US 7875429. Sequence 27 from patent US 7875430. Sequence 27 from patent US 7888023. Sequence 27 from patent US 7888495. Sequence 27 from patent US 7897342. Sequence 27 from patent US 7932033. Sequence 27 from patent US 7956246.
Taxon:
unidentified
Original size:
2830 bp
Patents:
WO2006039376 (lens , espacenet )
US7323556 (lens , espacenet )
US2006070139 (lens , espacenet )
JP2008514233 (lens , espacenet )
US7695914 (lens , espacenet )
US7696341 (lens , espacenet )
US7875429 (lens , espacenet )
US7875430 (lens , espacenet )
US7888023 (lens , espacenet )
US7888495 (lens , espacenet )
US7897342 (lens , espacenet )
US7932033 (lens , espacenet )
US7956246 (lens , espacenet )
View other 12 matches for this record
Method: QL-ELE-00-012
Go to GMOMETHODS record
View in JRC GMO-Matrix
Description: Qualitative duplex PCR method for detection of Cauliflower Mosaic Virus 35S promoter and nopaline synthase terminator (partim CaMV P-35S) (Waiblinger et al., 2008).
Target: CaMV P-35S
View other 15625 matches for this method
Predicted amplification details:
Mismatches
Gaps
From
To
Strand
Amplicon size
0
0
1699
1780
+
82 bp
1 gcctctgccg acagtggtcc caaagatgga cccccaccca cgaggagcat
51 cgtggaaaaa gaagacgttc caaccacgtc tt
View other 26489 matches with an identical amplicon
Primers and probe alignment:
Primer/Probe
% Identity
Length
Mismatches
Gaps
From
To
Score
primerA
100.0
18 bp
0
0
1
18
4.54e-08
primerB
100.0
22 bp
0
0
82
61
3.55e-10
probe
100.0
22 bp
0
0
21
42
3.55e-10
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.
