Match details
Record ID: NRN_CS353195
Database:
nrnl1
Go to original record
Description:
Sequence 44 from Patent WO2006069201. Sequence 233 from patent US 7598429. Sequence 59 from patent US 7868229. Sequence 80 from patent US 7888558. Sequence 26 from patent US 7939715. Sequence 1586 from patent US 7956242. Sequence 4837 from patent US 7960612. Sequence 61 from patent US 8022274. Sequence 5100 from patent US 8030546.
Taxon:
unidentified
Original size:
4276 bp
Patents:
WO2006069201 (lens , espacenet )
US7598429 (lens , espacenet )
US2006195944 (lens , espacenet )
US7868229 (lens , espacenet )
US7888558 (lens , espacenet )
US7939715 (lens , espacenet )
US7956242 (lens , espacenet )
US7960612 (lens , espacenet )
US8022274 (lens , espacenet )
US8030546 (lens , espacenet )
View other 7 matches for this record
Method: QL-ELE-00-012
Go to GMOMETHODS record
View in JRC GMO-Matrix
Description: Qualitative duplex PCR method for detection of Cauliflower Mosaic Virus 35S promoter and nopaline synthase terminator (partim CaMV P-35S) (Waiblinger et al., 2008).
Target: CaMV P-35S
View other 15625 matches for this method
Predicted amplification details:
Mismatches
Gaps
From
To
Strand
Amplicon size
0
0
653
734
+
82 bp
1 gcctctgccg acagtggtcc caaagatgga cccccaccca cgaggagcat
51 cgtggaaaaa gaagacgttc caaccacgtc tt
View other 26489 matches with an identical amplicon
Primers and probe alignment:
Primer/Probe
% Identity
Length
Mismatches
Gaps
From
To
Score
primerA
100.0
18 bp
0
0
1
18
4.54e-08
primerB
100.0
22 bp
0
0
82
61
3.55e-10
probe
100.0
22 bp
0
0
21
42
3.55e-10
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.
