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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Match details

Record ID: NRN_CS409983
Database: nrnl1 Go to original record
Description: Sequence 13 from Patent EP1698699. Sequence 13 from patent US 6501009. Sequence 13 from patent US 6943281. Sequence 13 from patent US 7408096. Sequence 13 from patent US 8101826.
Taxon: unidentified
Original size: 4149 bp
Patents: EP1698699 (lens, espacenet) US6501009 (lens, espacenet) US6501009 (lens, espacenet) US6943281 (lens, espacenet) US2003115630 (lens, espacenet) US7408096 (lens, espacenet) US2005273882 (lens, espacenet) US8101826 (lens, espacenet)

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Method: QT-ELE-00-001 Go to GMOMETHODS record
View in JRC GMO-Matrix
Description:Quantitative PCR method for detection of Cauliflower Mosaic Virus 35S promoter (Feinberg et al., 2005).
Target:CaMV P-35S

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Predicted amplification details:
Mismatches Gaps From To Strand Amplicon size
0 0 520 598 + 79 bp
Amplicon: 79 bp 
1     cgtcttcaaa gcaagtggat tgatgtgata tctccactga cgtaagggat
51    gacgcacaat cccactatcc ttcgcaaga

View other 6569 matches with an identical amplicon

Primers and probe alignment:
Primer/Probe % Identity Length Mismatches Gaps From To Score
primerA 100.0 22 bp 0 0 1 22 3.41e-10
primerB 100.0 22 bp 0 0 79 58 3.41e-10
probe 100.0 26 bp 0 0 31 56 2.52e-12

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.