Match details

Record ID: NRN_CS409983
Database: nrnl1 Go to original record
Description: Sequence 13 from Patent EP1698699. Sequence 13 from patent US 6501009. Sequence 13 from patent US 6943281. Sequence 13 from patent US 7408096. Sequence 13 from patent US 8101826.
Taxon: unidentified
Original size: 4149 bp
Patents: EP1698699 (lens, espacenet) US6501009 (lens, espacenet) US6501009 (lens, espacenet) US6943281 (lens, espacenet) US2003115630 (lens, espacenet) US7408096 (lens, espacenet) US2005273882 (lens, espacenet) US8101826 (lens, espacenet)

View other 14 matches for this record


Method: QL-ELE-00-018 Go to GMOMETHODS record
View in JRC GMO-Matrix
Description:Qualitative PCR method for detection of nopaline synthase terminator (Barbau-Piednoir et al., 2014).
Target:T-nos

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Predicted amplification details:
Mismatches Gaps From To Strand Amplicon size
1 0 4023 4091 + 69 bp

Amplicon: 69 bp
1     gattagagtc ccgcaattat acatttaata cgcgatagaa aacaaaatat
51    agcgcgcaaa ctaggataa 

View other 15381 matches with an identical amplicon


Primers alignment:
Primer/Probe % Identity Length Mismatches Gaps From To Score
primerA 100.0 28 bp 0 0 1 28 1.84e-13
primerB 96.0 25 bp 1 0 69 45 9.65e-11


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.