Match details

Record ID: NRN_CS646799
Database: nrnl1 Go to original record
Description: Sequence 54 from Patent WO2007061845. Sequence 90 from Patent WO2007061742. Sequence 54 from Patent WO2007127381. DELTA 15 DESATURASES SUITABLE FOR ALTERING LEVELS OF POLYUNSATURATED FATTY ACIDS IN OLEAGINOUS PLANTS AND YEAST. DELTA-9 ELONGASES AND THEIR USE IN MAKING POLYUNSATURATED FATTY ACIDS. Sequence 90 from patent US 7645604. Sequence 78 from patent US 7659120. Sequence 54 from patent US 7943823. Sequence 90 from patent US 8048653. Sequence 54 from patent US 8049062. Sequence 54 from patent US 8058517. Sequence 78 from patent US 8273957. Sequence 54 from Patent EP2405012.
Taxon: unidentified
Original size: 9088 bp
Patents: WO2007061845 (lens, espacenet) WO2007061742 (lens, espacenet) WO2007127381 (lens, espacenet) WO2007127381 (lens, espacenet) JP2007515951 (lens, espacenet) JP2009517019 (lens, espacenet) US7645604 (lens, espacenet) US7659120 (lens, espacenet) US7943823 (lens, espacenet) US8048653 (lens, espacenet) US8049062 (lens, espacenet) US8058517 (lens, espacenet) US8273957 (lens, espacenet) EP2405012 (lens, espacenet)

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Method: QL-ELE-00-004 Go to GMOMETHODS record
View in JRC GMO-Matrix
Description:Qualitative PCR method for detection of Cauliflower Mosaic Virus 35S promoter (Lipp et al.,2001).
Target:CaMV P-35S

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Predicted amplification details:
Mismatches Gaps From To Strand Amplicon size
0 0 2991 3113 + 123 bp

Amplicon: 123 bp
1     ccacgtcttc aaagcaagtg gattgatgtg acatctccac tgacgtaagg
51    gatgacgcac aatcccacta tccttcgcaa gacccttcct ctatataagg
101   aagttcattt catttggaga gga 

View other 3591 matches with an identical amplicon


Primers alignment:
Primer/Probe % Identity Length Mismatches Gaps From To Score
primerA 100.0 21 bp 0 0 1 21 1.84e-09
primerB 100.0 25 bp 0 0 123 99 1.30e-11


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.