Match details

Record ID: NRN_CS159296
Database: nrnl1 Go to original record
Description: Sequence 3 from Patent WO2005080579.
Taxon: unidentified
Original size: 15126 bp
Patents: WO2005080579 (lens, espacenet)

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Method: QL-ELE-00-001 Go to GMOMETHODS record
View in JRC GMO-Matrix
Description:Qualitative PCR method for detection of Cauliflower Mosaic Virus 35S promoter (BVL L 00.00-31, 1998).
Target:CaMV P-35S

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Predicted amplification details:
Mismatches Gaps From To Strand Amplicon size
0 0 7058 7249 + 192 bp

Amplicon: 192 bp
1     gctcctacaa atgccatcat tgcgataaag gaaaggccat gttgaagatg
51    cctctgccga cagtggtccc aaagatggac ccccacccac gaggagcatg
101   tggaaaaaga agacgttcca accacgtctt caaagcaagt ggattgatgt
151   gatatctcac tgacgtaagg gatgacgcac aatcccacta tc 

View other 7 matches with an identical amplicon


Primers alignment:
Primer/Probe % Identity Length Mismatches Gaps From To Score
primerA 100.0 19 bp 0 0 1 19 3.05e-08
primerB 100.0 20 bp 0 0 192 173 9.13e-09


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.