Match details
Record ID:
NRN_AX441372
Database:
nrnl1
Go to original record
Description:
Sequence 3 from Patent EP1209237. Sequence 3 from Patent EP1213356. Sequence 9 from Patent WO2006107954. Sequence 3 from patent US 5859336. Sequence 3 from patent US 6075185. Sequence 3 from patent US 6720488. Sequence 3 from patent US 5625136. Method for detecting insect-tolerant transgenic crop plant and primer to be used therein.
Taxon:
unidentified
Original size:
1947 bp
Patents:
EP1209237 (lens , espacenet )
EP1213356 (lens , espacenet )
WO2006107954 (lens , espacenet )
US5859336 (lens , espacenet )
US6075185 (lens , espacenet )
US6720488 (lens , espacenet )
US2003046726 (lens , espacenet )
US5625136 (lens , espacenet )
JP1999266875 (lens , espacenet )
JP11266875
(lens , espacenet )
View other 199 matches for this method
Predicted amplification details:
Mismatches
Gaps
From
To
Strand
Amplicon size
0
0
103
231
+
129 bp
1 cccatcgaca tcagcctgag cctgacccag ttcctgctga gcgagttcgt
51 gcccggcgcc ggcttcgtgc tgggcctggt ggacatcatc tggggcatct
101 tcggccccag ccagtgggac gccttcctg
View other 183 matches with an identical amplicon
Primers and probe alignment:
Primer/Probe
% Identity
Length
Mismatches
Gaps
From
To
Score
primerA
100.0
21 bp
0
0
1
21
1.93e-09
primerB
100.0
20 bp
0
0
129
110
6.52e-09
probe
100.0
21 bp
0
0
86
66
1.93e-09
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.